ABSTRACT
In an experiment on organic production of okra (Abelmoschus esculentus (L.) Moench) that was carried out from September 2013 to January 2014, in Manaus, Amazonas state, Brazil, we observed large chlorotic, necrotic, helical, discontinuous, dark or light-brown lesions with partial detachment of the injured area on the adaxial surface of leaves located in the median and basal portions of the plants. A whitish mycelium mantle covers the lesions on the leaves at the abaxial surface at high moisture conditions. Using morphological characteristics, Koch's postulates, and phylogenetic analyses of the ITS-5.8S rDNA region, we identified that the fungus causing the lesions on the okra leaves was Thanatephorus cucumeris (Frank) Donk (asexual stage of Rhizoctonia solani Kuhn of the anastomosis group AG-1 ID). This is the first report of T. cucumeris causing web blight on okra in Brazil, and probably in the world. So far, T. cucumeris was described on okra only on post-harvest pods rotting and seedlings' damping off.(AU)
Em um experimento sobre a produção orgânica do quiabeiro (Abelmoschus esculentus (L.) Moench), que foi instalado em Manaus, Amazonas, Brasil, no período de setembro de 2013 a janeiro de 2014, observou-se, na face adaxial do limbo foliar das folhas medianas e baixeiras, a ocorrência de lesões cloróticas e necróticas grandes, helicoidais, de coloração marrom escuro ou marrom claro e descontínuas, com desprendimento parcial da área lesionada. Na face abaxial, sobre as manchas, em condições de alta umidade, constatou-se a presença de um manto micelial esbranquiçado do patógeno, facilmente visível, recobrindo a área colonizada. Por meio da análise de características morfológicas, postulados de Koch e análise filogenética da região ITS-5.8S do rDNA do fungo isolado, identificou-se Thanatephorus cucumeris (Frank) Donk (fase assexuada Rhizoctonia solani Kuhn grupo de anastomose AG-1 ID) como o agente causal da doença. Este é o primeiro relato de T. cucumeris causando mancha foliar em quiabeiro no Brasil e, provavelmente, no mundo. Até então, sua ocorrência em quiabeiro estava restrita à podridão pós-colheita em frutos e tombamento de mudas.(AU)
Subject(s)
Plant Diseases , Rhizoctonia , Abelmoschus , Fungi , Organic AgricultureABSTRACT
A series of multilocus sequence-based nuclear DNA markers was developed to infer the phylogeographical history of the Basidiomycetous fungal pathogen Rhizoctonia solani AG-1 IA infecting rice and soybean worldwide. The strategy was based on sequencing of cloned genomic DNA fragments (previously used as RFLP probes) and subsequent screening of fungal isolates to detect single nucleotide polymorphisms (SNPs). Ten primer pairs were designed based on these sequences, which resulted in PCR amplification of 200-320 bp size products and polymorphic sequences in all markers analyzed. By direct sequencing we identified both homokaryon and heterokaryon (i.e. dikaryon) isolates at each marker. Cloning the PCR products effectively estimated the allelic phase from heterokaryotic isolates. Information content varied among markers from 0.5 to 5.9 mutations per 100 bp. Thus, the former RFLP codominant probes were successfully converted into six distinctively variable sequence-based nuclear DNA markers. Rather than discarding low polymorphism loci, the combination of these distinctively variable anonymous nuclear markers would constitute an asset for the unbiased estimate of the phylogeographical parameters such as population sizes and divergent times, providing a more reliable species history that shaped the current population structure of R. solani AG-1 IA.
ABSTRACT
The main goal of our research was to search for SSRs in the Eucalyptus EST FORESTs database (using a software for mining SSR-motifs). With this objective, we created a database for cataloging Eucalyptus EST-derived SSRs, and developed a bioinformatics tool, named Satellyptus, for finding and analyzing microsatellites in the Eucalyptus EST database. The search for microsatellites in the FORESTs database containing 71,115 Eucalyptus EST sequences (52.09 Mb) revealed 20,530 SSRs in 15,621 ESTs. The SSR abundance detected on the Eucalyptus ESTs database (29% or one microsatellite every four sequences) is considered very high for plants. Amongst the categories of SSR motifs, the dimeric (37%) and trimeric ones (33%) predominated. The AG/CT motif was the most frequent (35.15%) followed by the trimeric CCG/CGG (12.81%). From a random sample of 1,217 sequences, 343 microsatellites in 265 SSR-containing sequences were identified. Approximately 48% of these ESTs containing microsatellites were homologous to proteins with known biological function. Most of the microsatellites detected in Eucalyptus ESTs were positioned at either the 5 or 3 end. Our next priority involves the design of flanking primers for codominant SSR loci, which could lead to the development of a set of microsatellite-based markers suitable for marker-assisted Eucalyptus breeding programs